PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609548.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 257aa    MW: 28789.1 Da    PI: 8.5595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.6e-1573125155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++++h ++Er+RR ++ s f  Lr+llP       ++K s a+ + +Av+YIk+Lq
  XP_013609548.1  73 KKMKHRAIERQRRFEVSSLFKSLRSLLPLqY---IQGKRSTADHVSQAVNYIKDLQ 125
                     6899*************************66...*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.31E-1470129No hitNo description
SuperFamilySSF474599.42E-1771147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.09772124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1373141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-678130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDFVTSMFMP DLTDEDGLLF SDSFLLSPLI AYQNHDVCNQ ITDKNGGSNK KRSLCDTYVA  60
SEANNGDDDR ESKKMKHRAI ERQRRFEVSS LFKSLRSLLP LQYIQGKRST ADHVSQAVNY  120
IKDLQNKIKK LNDKKDRLKK SLPSTLTAHP TTEECTSSLS SSLSTSSSRC SCVGDKHITV  180
MVMPCFVGIE IIISCCLERN KSCLSIALQI LAQEERLSVV SCLSTRLQQR FVHTIVSQVG  240
SGIKINISEL KDKIVNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609548.10.0PREDICTED: transcription factor bHLH125
SwissprotQ9LQ081e-123BH125_ARATH; Transcription factor bHLH125
TrEMBLA0A0D3E3T00.0A0A0D3E3T0_BRAOL; Uncharacterized protein
STRINGBra036640.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.12e-97bHLH family protein